A is related to B iff there is some relation between A and B.
'is related to' is the top level relation in SIO
core
relations+
is related to
has attribute is a relation that associates a entity with an attribute where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type.
core
has attribute
is attribute of is a relation that associates an attribute with an entity where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type.
is attribute of
denotes is a relation between an entity and what it is a sign or indication of, or what specifically means.
denotes
the symbol '%' denotes a proportion in relation to a whole.
has part is a transitive, reflexive and antisymmetric relation between a whole and itself or a whole and its part.
has part
a collection of cars has as a car as a part;a car has an engine as a part; a car has a piston as a part;
is time boundary of
has proper part is an antisymmetric, irreflexive (normally transitive) relation between a whole and a distinct part.
has proper part
a car has an engine as a proper part; a car has a piston as a proper part;
has boundary is a mereological relation between a whole and boundary located at its periphery.
has boundary
the surface of an apple is a 2D boundary of the apple.
has member is a mereological relation between a collection and an item.
core
has member
a collection of cars has as a car as a member
is denoted by
A is located in B iff the spatialtemporial region occupied by A is part of the spatialtemporal region occupied by B. [T][R]
OBO_REL:located_in
core
is located in
A parasite in the interior of a person's intestine is located in their intestinal lumen.
is participant in is a relation that describes the participation of the subject in the (processual) object.
is participant in
a car is a participant in a car race; glucose is a participant in glycolysis
is agent in is a relation between an entity and a process, where the entity is present throughout the process, no permanent material change occurs, and is a causal participant in the process.
sadi
is agent in
hexokinase is an agent in the conversion of glucose to glucose-6-phosphate
is provider of is a relation between a source and the entity it makes available.
is provider of
is provided by is a relation between an entity and the entity that provides it.
dc:source
has provider
is part of is a transitive, reflexive and anti-symmetric mereological relation between a whole and itself or a part and its whole.
OBO_REL:part_of
core
is part of
is proper part of is an asymmetric, irreflexive (normally transitive) relation between a part and its distinct whole.
OBO_REL:proper_part_of
core
is proper part of
is member of is a mereological relation between a item and a collection.
is member of
is boundary of is a mereological relation between a boundary located at the periphery of a whole.
is boundary of
A is contained in B iff the spatial region occupied by A is part of the spatial region occupied by B and A is not part of B. [T]
OBO_REL:contained_in
core
is contained in
has participant is a relation that describes the participation of the object in the (processual) subject.
OBO_REL:has_participant
core
has participant
has agent is a relation between a process and an entity, where the entity is present throughout the process and is a causal participant in the process.
OBO_REL:has_agent
core
sadi
has agent
A is location of B iff the spatialtemporal region occupied by A has the spatialtemporal region occupied by B as a part. [T][R]
nlp+
is location of
A contains B iff the spatial region occupied by A has the spatial region occupied by B as a part, and B is not part of A. [T]
contains
interacts with
A is connected to B iff there exists a fiat, material or temporal path between A and B. [S][T]
core
nlp
is connected to
A is adjacent to B iff there is a small, but non-zero distance between A and B
OBO_REL:adjacent_to
core
nlp
is adjacent to
is represented by: a relation between an entity and some symbol.
is represented by
is supported by is a relation between a proposition and something that supports the truth of the assertion.
is supported by
has disputing evidence is a relation between a proposition and something that disputes (does not directly support) the truth of the assertion.
is disputed by
is supporting evidence for
is disputing evidence for
a represents b when a serves as a sign, symbol or model of b.
core
represents
is positionally after is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically greater than the projection of the position of the second entity.
is positionally after
A is referred to by B iff B is an informational entity that makes reference to A.
is referred to by
A has concretization B iff A is an informational entity and B is the a quality of some material entity.
has concretization
A is concretization of B iff A is a quality of a material entity and B is an informational entity.
is concretization of
is measurement value of is a relation between a value and the entity that it is a measurement of.
is measurement value of
has measurement value is a relation between a quality/realizable and a measurement value.
core
has measurement value
has quality is a relation between an entity and the quality that it bears.
has quality
is quality of is a relation between a quality and the entity that it is a property of.
is quality of
is source of is a relation between a source of information about some entity.
is source of
has unit is a relation between a quantity and the unit it is a multiple of.
core
has unit
is unit of is a relation between a unit and a quantity that it is a multiple of.
is unit of
has property is a relation between an entity and the quality, capability or role that it and it alone bears.
has property
michel's hair has the quality of being brown in colour.
is property of is a relation betweena quality, capability or role and the entity that it and it alone bears.
is property of
has function is the relation between an entity and a function that is ascribed to it.
has function
is function of is a relation between a function and an entity that it is a property of.
is function of
is role of is a relation between a role and the entity that it is a property of.
is role of
has role is a relation between an entity and a role that it bears.
has role
has output is a relation between an process and an entity, where the entity is present at the end of the process.
core
sadi
has output
has input is a relation between a process and an entity, where the entity is present at the beginning of the process.
core
sadi
has input
is input in is a relation between an entity and a process, where the entity is present at the beginning of the process.
sadi
is input in
glucose and ATP are inputs in the hexokinase-mediated conversion of glucose to glucose-6-phosphate.
is output of is a relation between an entity and a process, where the entity is present at the end of the process.
sadi
is output of
glucose-6-phosphate and ADP are outputs in the hexokinase-mediated conversion of glucose to glucose-6-phosphate.
is implementation of is a relation between an information entity and a specification that it conforms to.
is implementation of
has implementation is a relation between a specification and an implementation that conforms to it.
has implementation
has disposition is the relation between an entity and a disposition that it bears.
has disposition
is disposition of is a relation between a disposition and the entity that it is a property of.
is disposition of
is positionally before is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically less than the projection of the position of the second entity.
is positionally before
is directly after is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically greater than the projection of the position of the second entity, and the entities are adjacent to one another.
is directly after
is directly before is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically less than the projection of the position of the second entity, and the entities are adjacent to one another.
is directly before
A transitive, symmetric, temporal relation in which one entity is causally related with another non-identical entity.
core
is causally related with
A transitive temporal relation in which one entity was materially formed from another non-identical entity.
OBO_REL:derives_from
core
is derived from
a derives to b if and only if a or some part thereof is consumed in the formation of b.
derives into
a immediately derives into b if and only if a or some significant part thereof is consumed in the formation of b and there are no identifiable intermediate entities between a and b.
immediately derives into
A non-transitive temporal relation in which one entity is immediately derived from a non-identical entity such that there are no intermediate entities between them.
is immediately derived from
A transitive, temporal relation in which one process precedes (has occured earlier than) another process.
core
precedes
OBO_REL:preceded_by
is preceded by
A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes.
immediately precedes
A non-transitive temporal relation in which one process is immediately preceded by another process, such that there is no interval of time between the two processes.
is immediately preceded by
is reference for is a relation between a document that provides information about an entity.
is referenced by
has source is a relation between an entity and another entity from which it stems from.
has source
is annotation of is a relation between some textual entity and the entity that it annotates.
is annotation of
is annotated with
was annotated with
has annotation is a relation between an entity and some textual anntotation.
has annotation
document x is annotated with the keywords 'ontology','semantic web'
is variant of: a relationship indicating that two entities are different (by some measure), but either achieve the same objectives in different ways or are permutations of one another (temporal, logical or otherwise)
core
is variant of
has direct part is a relation to specify a part at a particular level of granularity
has direct part
a car has an engine as a direct part
A is prior version of B iff A is a variant of B and B derives from A.
is prior version of
cites is a relation to refer to by way of example, authority or proof.
cites
is cited by is a relation from an object that is referred to by way of example, authority or proof.
is cited by
is similar to is a relation between two entities that share one or more features.
is similar to
A is subsequent version of B iff A is a variant of B and A derives from B.
is subsequent version of
is covalently connected to (transitive)
has target is a relation between a process and an entity, where the entity is present at the beginning of the process and undergoes a change or transformation in the process.
has target
is target in is a relation between an entity and a process, where the entity is present at the beginning of the process and undergoes a change or transformation in the process.
is target in
glucose is a target in the hexokinase-mediated conversion of glucose to glucose-6-phosphate.
is weakly interacting with is a symmetric relation between two molecular entities (or any part thereof) that are interacting through some weak force (van der waals, hydrogen bonds, electrostatic interactions)
is weakly interacting with (transitive)
a is causally related to b iff there is a causal chain of events from a to b
is causally related to
is direct part of is a relation between a specific part (at some level of granularity) and its whole.
core
is direct part of
is product of is a relation between an entity and a process, where the entity is present at the end of the process as a result of a transformation in the process target.
sadi
is product of
glucose-6-phosphate is the product of the hexokinase-mediated conversion of glucose to glucose-6-phosphate.
has product is a relation between an process and an entity, where a new entity exists at the end of the process.
sadi
has product
is component part of is a relation between a component and a whole, where the component is instrinsic to the whole, and loss of the part would change the kind that the whole is.
core
is component part of
A is spatiotemporally related to B iff A is in the spatial or temporal vicinity of B
core
is spatiotemporally related to
A 'is surrounded by' B iff the A 'is contained by' B and A 'is adjacent to' B or A 'is directly connected to' B.
is surrounded by
A 'surrounds' B iff the A 'contains' B and A 'is adjacent to' B or A 'is directly connected to' B.
surrounds
A overlaps with B iff there is some C that is part of both A and B. [S][R]
overlaps with
is about is a relation between an information content entity and the entity that its primary subject.
is about
is covalently connected to is a relation between an atom and another atom.
is covalently connected to
is weakly interacting with
A relation between an information content entity and a product that it (directly/indirectly) specifies
specifies
a relation between a product and the information content entity that specifies it.
is specified by
is manifested as is a relation between an expression and its manifestations.
is manifested as
the english language version of 'war of the worlds' is manifested as a collection of english language versions of the book.
a is causally related from b iff there is a causal chain of events from b to a
core
is causally related from
realizes is a relation between a process and a realizable entity (role, function, disposition).
core
realizes
is realized in
the role of a patient is realized in medical examination
satisfies is a relation between an entity and the specification or objective that it conforms to.
satisfies
is satisfied by
is created by
was created by
has creator is a relation between an entity and that which created it.
dc:creator
has creator
the iPhone was created by Apple Inc
is created by
is creator of is a relation between a creator and an entity..
is creator of
has component part is a relation between a whole and a component part where the component is instrinsic to the whole, and loss of the part would change the kind that it is.
has component part
a human has blood as a component part
has expression
the story 'war of worlds' is expressed as every language edition of the book 'war of the worlds'
is expression of is a relation between more concrete expression of some conceptualization.
is expression of
every language edition of 'war of the worlds' are expressions of the story of 'war of the worlds'
A is broader than B (t) iff for A is broader than B.
http://www.w3.org/2004/02/skos/core#narrowerTransitive
is broader than (t)
A is narrower than B (t) iff for A is narrower than B.
http://www.w3.org/2004/02/skos/core#broaderTransitive
is narrower than (t)
A is generically related with B iff A is an abstract entity or an information content entity and B is a information content entity or a physical entity, respectively.
is generically related with
is manifestation of
A is narrower than B iff the meaning of term A is narrower in scope than the meaning of term B
http://www.w3.org/2004/02/skos/core#broader
is narrower than
http://www.w3.org/2004/02/skos/core#narrower
is broader than
A is match to B iff A and B are terms with similar (related, broad, close, exact) meanings
http://www.w3.org/2004/02/skos/core#relatedMatch
is match to
http://www.w3.org/2004/02/skos/core#exactMatch
is exact match to
http://www.w3.org/2004/02/skos/core#closeMatch
is close match to
http://www.w3.org/2004/02/skos/core#broadMatch
is broad match to
is dissimilar to is a relation between two entities in which one is considered dissimilar to the other based on some criteria.
is dissimilar to
is opposite to is a relation between two entities in which one is diametrically opposed to the other.
is opposite to
hot is the opposite of cold; left is opposite of right
is version of is a relation that holds between any two versions in which one is a subsequent or alternate version of (through a branch).
is version of
has parameter is a relation between a process and an information content entity which modulates the behaviour of some participant.
sadi
has parameter
is parameter in is a relation between a data item and some data transformation process.
is parameter in
is described by is a relation between one entity and another entity that provides a description (detailed account) of it.
is described by
is orthologous to is a relation between two biological entities that share a common ancestor and occur in different species.
is orthologous to
describes is a relation between one entity and another entity that it provides a description (detailed account of).
core
describes
has capability is a relation between an entity and the capability that it bears.
has capability
SIO has the capability to semantically integrate data.
refers to is a relation between one entity and the entity that it makes reference to.
core
nlp+
refers to
is subject of
is paralogous to is a relation between two entities which indicates their common ancestry as a result of a gene duplication.
is paralogous to
mentions
references is a relation between one entity and the entity that it makes reference to by name, but is not described by it.
core
references
is model of is a relation between a model (an artifact) and the entity it purports to represent.
is model of
the architect builds a model that represents the building she envisions.
is modelled by
a relation between two entities which indicates their common ancestry but due to horizontal gene transfer.
is xenologous to
has trigger is a relation between a realizable and the factor that causes it to be realized.
has trigger
is trigger for
has basis is a relation between a realizable entity and the quality that forms the basis for it.
has basis
the solubility of salt (the disposition) is based on the molecular structure of NaCl (the quality) that allows the polarized water-molecules (the trigger) to break the ion bonds (the realization).
is base for is a relation between a quality and the realizable entity that it is the basis for.
is base for
the solubility of salt (the disposition) is based on the molecular structure of NaCl (the quality) that allows the polarized water-molecules (the trigger) to break the ion bonds (the realization).
is realizable property of
has realizable property
is capability of is a relation between a capability and the entity that bears it.
is capability of
A is directly connected to B iff there exists a path direclty between A and B.
is directly connected to
A transitive temporal relation in which an entity mainstains identity from one state to another.
transforms into
A temporal relation in which an entity mainstains identity from one state to another.
immediately transforms into
A transitive temporal relation in which an entity mainstains identity from one state to another.
is transformed from
A temporal relation in which an entity mainstains identity from one state to another.
is immediately transformed from
in relation to is a comparative relation to indicate that the instance of the class holding the relation exists in relation to another entity.
core
in relation to
a relation between an entity and an identifier.
has identifier
identifies
a relation between an identifier and an entity.
is identifier for
has unique identifier is an inverse functional relation between an entity and an identifier that uniquely identifies it.
has unique identifier
is unique identifier for is a relation between an identifier and an entity that it uniquely identifies
is unique identifier for
has time boundary
has start time
has end time
is start time of
is end time of
exists at is a relation between an entity and a time measurement.
core
exists at
a is mutual disposition of b if and only if the realization of the disposition a necessarily causes the realization of the disposition b.
is mutual disposition of
is greater than or equal to is a comparison relation between two quantities in which the first has a value larger or equal to the second.
is greater than or equal to
a is mutually related to b if and only if the realization of the relation of a necessarily causes the realization of a relation to b.
is mutually related to
a is mutual role of b if and only if the realization of role a necessarily causes the realization of role b.
is mutual role of
is greater than to is a comparison relation between two quantities in which the first has a value smaller or equal to the second.
is lesser than or equal to
is greater than to is a comparison relation between two quantities in which the first has a value larger than the second.
is greater than
is lesser than to is a comparison relation between two quantities in which the first has a value smaller than the second.
is lesser than
is comparable to is a relation between two entities that share at least one feature whose value can be compared.
core
is comparable to
is numerically comparable to is a comparison relation between two quantities whose datatype value can be compared.
is numerically comparable to
is equal to is a comparison relation between two quantities whose value are exactly the same.
is equal to
is inequal to is a comparison relation between two quantities whose value are not the same.
is inequal to
has evidence is a relation between a proposition and something that demonstrates the truth of the assertion.
has evidence
is evidence for
has evidence is a relation between a proposition and something that refutes (is incompatible with) the truth of the assertion.
is refuted by
is refuting evidence for
measured at is a relation between a measurement value and the time measurement.
core
measured at
a in relation from b is a comparative relation in a is the object of reference in a relation with b.
in relation from
has frequency is a relation that specifies the occurence of an object or event
has frequency
is frequency of is a relation between a temporal unit and an object or event
is frequency of
has substrate is a relation between a process and an object where the object is destroyed by its participation in the process.
has substrate
is first part of is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
is first part of
has first part is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
has first part
has last part is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
has last part
is last part of is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
is last part of
has ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
has ordered part
is ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
is ordered part of
is specialization of is a relation between a more specific instance (in terms of spatial/temporal localization & other attributres) than the other.
http://www.w3.org/ns/prov#specializationOf
is specialization of
a weather forecast for the city of London produced at a specific time is a specialization of a weather forecast for the city of London.
is generalization of is a relation between a more general instance (in terms of spatial/temporal localization & other attributres) than the other.
is generalization of
is alternate of relates two specialized instances.
http://www.w3.org/ns/prov#alternateOf
is alternate of
two weather forecasts for the city of London produced at different times or by different organizations (etc) are alternates of each other, and instances of / specializations of forecasts for the city of London.
a is mutual capability of b if and only if the realization of capability a necessarily causes the realization of capability b.
is mutual capability of
x regulates y if and only if x is a process and y is either a process or a quality, and the progression of x exerts an effect on the frequency, rate or extent of y
regulates
is regulated by
results in
is result of
affects
is affected by
is identical to is a relation between two objects that are conceptually the same notwithstanding provenance or other non-intrinsic attributes.
is identical to
has data item is a relation between a dataset and any described / referrenced entity.
core
has data item
'is data item in' is a relation between an entity that is described or referenced in a dataset.
core
is data item in
has phenotype is a relation between an object and an observable/measurable characteristic.
has phenotype
is phenotype of is a relation between an observable/measurable characteristic and an object.
is phenotype of
x positively regulates y if and only if x is a process and y is either a process or a quality, and the progression of x exerts an effect that increases the frequency, rate or extent of y
positively regulates
x negatively regulates y if and only if x is a process and y is either a process or a quality, and the progression of x exerts an reduced effect on the frequency, rate or extent of y
negatively regulates
x is associated with y when x and y are logically or statistically related to one another.
is associated with
x is correlated with y when x holds a statistical relationship with y
is correlated with
A relation between two objects, in which the first object contains information that is used to produce the second object.
encodes
an open reading frame encodes a protein (it contains information that specifies the amino acid composition and topology)
A relation between two objects, in which the first object is produced from the information contained in the second object.
is encoded by
a relation between two information content entities in which one is transcribed into (an exact or similar kind) another through some process.
is transcribed into
DNA is transcribed into RNA
is transcribed from
is translated into
RNA is translated into Protein
a relation between two information content entities in which one is translated into (a completely different kind of entity) another through some process.
is translated from
a relation between two entities which indicates their common ancestry.
is homologous to
A relation between a informational entity and its actual value (numeric, date, text, etc).
core
nlp
relations
sadi
has value
sio-subset-relations.owl